PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093656.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 332aa    MW: 37462.7 Da    PI: 7.259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12195220126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  XP_011093656.1 195 YQPDICKDYKETGYCGYGDSCKFMHD 220
                     67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9193225IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878194222IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10195220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12195225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-13261313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.79E-13271314No hitNo description
PfamPF139204.9E-9271314No hitNo description
SMARTSM001848.1E-5272309IPR001841Zinc finger, RING-type
CDDcd001625.03E-9272313No hitNo description
PROSITE profilePS5008910.571272310IPR001841Zinc finger, RING-type
PROSITE patternPS005180287296IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MQGDEADGGG AAATDDGVTV CNFFRKPSKA KNIRKRTALE EGEGDDEDSK VESSVVYNKK  60
KLAAADNKLH FSSGPSKHSK EAEVEKPKAS VFEYESSKEI QVHNDSRATA TLETETEFSR  120
DARAIRERVL KQAEEALKGK KKSDGEDKLY KGLHGYTDYK AGFRREQTVA SEKAGGSHGP  180
LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEKEKA  240
RAKRMAMGLK EDDDERGSES SDEDDDSLPF ACFICREPFV DPVVTKCKHY FCEHCALKHH  300
ARNKKCFVCN QPTNGIFNTA FEIRKRMAAE RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A2e-212683271473Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093656.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-167C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A022QWE90.0A0A022QWE9_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000355221e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-150C3H family protein